NCBI - National Center for Biotechnology Information/NLM/NIH

Repositories

• ncbi-logging

  Log monitoring and gathering infrastructure to feed analytics
  C++ 1 1 0 0 Updated Aug 12, 2020

• icn3d

  WebGL-based protein structure viewer

  webgl jupyter-notebook chemical protein snp nucleotide structure-viewer
  JavaScript 21 49 0 0 Updated Aug 12, 2020

• cwl-ngs-workflows-cbb

  A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

  ngs ngs-analysis ngs-pipeline cwl-workflow
  Common Workflow Language 1 12 1 0 Updated Aug 12, 2020

• cxx-toolkit
  CSS 30 12 0 0 Updated Aug 11, 2020

• sra-tools

  SRA Tools
  C 143 444 136 4 Updated Aug 11, 2020

• ncbi-vdb

  ncbi-vdb
  C 24 64 12 0 Updated Aug 11, 2020

• GapTools

  dbGaP data validation tool repo
  Shell 0 1 0 0 Updated Aug 11, 2020

• SKESA

  SKESA assembler
  C++ 8 54 6 1 Updated Aug 10, 2020

• pgap

  NCBI Prokaryotic Genome Annotation Pipeline
  Common Workflow Language 37 103 6 0 Updated Aug 10, 2020

• amr

  amr_finder
  C++ 8 48 3 0 Updated Aug 10, 2020

• rapt
  Shell 2 2 0 0 Updated Aug 7, 2020

• datasets

  NCBI Datasets is an experimental resource for finding and building datasets
  3 21 0 0 Updated Jul 27, 2020

• ncbi-oauth

  OAuth 2 and JWT
  1 1 0 0 Updated Jul 22, 2020

• ngs-tools
  C++ 15 53 10 2 Updated Jul 21, 2020

• ngs

  NGS Language Bindings
  C++ 45 100 10 1 Updated Jul 21, 2020

• ReadFinder
  0 0 0 0 Updated Jul 20, 2020

• magicblast
  Python 6 19 7 0 Updated Jul 18, 2020

• datadicer
  JavaScript 0 2 0 3 Updated Jul 16, 2020

• HYDROID

  Python package for analyzing hydroxyl-radical footprinting experiments of DNA-protein complexes

  bioinformatics structural-biology
  Python 8 7 3 0 Updated Jul 15, 2020

• docker
  C++ 21 25 0 0 Updated Jul 9, 2020

• blast_plus_docs
  6 26 0 2 Updated Jul 7, 2020

• cloud-transcriptome-annotation

  Time and cost comparison on GCP and AWS for transcriptome annotation

  aws jupyter-notebook gcp transcriptome-annotation
  Jupyter Notebook 0 0 0 0 Updated Jul 1, 2020

• ncbi-vdb3
  3 0 0 0 Updated Jun 16, 2020

• osiris

  OSIRIS is a public domain quality assurance software package that facilitates the assessment of multiplex short tandem repeat (STR) DNA profiles based on laboratory-specific protocols. OSIRIS evaluates the raw electrophoresis data contained in .fsa or .hid files using an independently derived mathematically-based sizing algorithm. OSIRIS current…
  C++ 19 11 0 0 Updated Jun 4, 2020

• BAMscale

  BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
  C 7 38 0 1 Updated Jun 2, 2020

• pm4ngs

  Project Manager for NGS data analysis

  bioinformatics next-generation-sequencing rnaseq ngs-analysis ngs-pipeline cwl-workflow chipseq
  Jupyter Notebook 0 7 0 0 Updated May 28, 2020

• biomedical-citation-selector-trainer

  Biomedical Citation Selector Trainer
  Python 0 2 0 0 Updated May 27, 2020

• biomedical-citation-selector
  Python 3 3 0 0 Updated May 27, 2020

• dcode-cape
  C++ 4 0 0 0 Updated May 23, 2020

• AptaSuite
  Java GPL-3.0 0 0 0 1 Updated May 21, 2020